cath |
CATH Protein Structure Classification |
protein |
|
ensembl_anolis_carolinensis_genome |
|
genome |
fasta,blast |
ensembl_arabidopsis_thaliana_genome |
|
genome |
fasta,blast,bowtie,bowtie2 |
ensembl_ciona_intestinalis_genome |
|
genome |
fasta,blast |
ensembl_ciona_savignyi_genome |
|
genome |
fasta,blast |
ensembl_danio_rerio_genome |
|
genome |
fasta,blast |
ensembl_gadus_morhua_genome |
|
genome |
fasta,blast |
ensembl_gallus_gallus_genome |
|
genome |
fasta,blast |
ensembl_homo_sapiens_genome |
|
genome |
fasta,blast,bowtie,bowtie2 |
ensembl_homo_sapiens_protein |
Genome Human (Ensembl) sequences proteiques |
protein |
fasta,blast |
ensembl_latimeria_chalumnae_genome |
|
genome |
fasta,blast |
ensembl_monodelphis_domestica_genome |
|
genome |
fasta,blast |
ensembl_mus_musculus_genome |
|
genome |
fasta,blast,bowtie2,bowtie |
ensembl_ornithorhynchus_anatinus_genome |
|
genome |
fasta,blast |
ensembl_oryzias_latipes_genome |
|
genome |
fasta,blast |
ensembl_rattus_norvegicus_genome |
|
genome |
fasta,blast,bowtie2,bowtie |
ensembl_tetraodon_nigroviridis_genome |
|
genome |
fasta,blast |
ensembl_xenopus_tropicalis_genome |
|
genome |
fasta,blast |
env_nt |
Environmental nucleotide sequences (NCBI) |
nucleic |
fasta,blast |
genbank |
|
nucleic |
fasta,blast |
hhomp |
HHomp package for the prediction and classification of outer membrane proteins |
|
|
imcb_callorhinchus_milii_genome |
|
genome |
fasta,blast |
interpro |
InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. |
protein_classification |
|
ncbi_chrysemys_picta_genome |
|
genome |
fasta,blast |
nr |
NR non-redundant protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB and RefSeq (NCBI) |
protein |
fasta,blast |
nr70 |
NR70 non-redundant protein sequence database (NCBI) |
protein |
fasta, blast |
nr80 |
NR80 non-redundant protein sequence database (NCBI) |
protein |
fasta, blast |
nr90 |
NR90 non-redundant protein sequence database (NCBI) |
protein |
fasta, blast |
nr_complete |
NR non-redundant protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB and RefSeq (NCBI) |
protein |
fasta, blast |
nt |
NT nucleotide sequence database, with entries from all traditional divisions of GenBank, EMBL and DDBJ excluding bulk divisions (gss, sts, pat, est, htg divisions) and wgs entries. Not non-redundant (NCBI) |
nucleic |
fasta,blast,emboss |
pfam |
Pfam is a collection of protein family alignments which were constructed semi-automatically using hidden Markov models (HMMs) |
|
|
taxdb |
Additional taxonomy information for the formatted database (contains common and scientific names) |
|
|
taxonomy |
The NCBI taxonomy database contains the names of all organisms that are represented in the genetic databases |
|
|
ucsc_branchiostoma_floridae_genome |
|
genome |
fasta, blast |
uniprot |
UniProt (Universal Protein Resource) is the world s most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR. |
protein |
swiss,fasta,blast,emboss |
uniprot_swissprot |
Complete UniProtKB/Swiss-Prot data set |
protein |
swiss,fasta,blast |
uniprot_swissprot_fasta |
Complete UniProtKB/Swiss-Prot data set |
protein |
fasta,blast |
uniref90 |
UniProt Reference Clusters 90 - UniRef90 clusters are generated from the UniRef100 seed sequences with a 90% sequence identity threshold using the CD-HIT algorithm. |
protein |
|
univec |
UniVec is a database that can be used to quickly identify segments within nucleic acid sequences which may be of vector origin (vector contamination) |
nucleic |
fasta,blast |
utrdb |
A collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs |
nucleic |
fasta,blast |