The PHYTOBS pipeline is a series of scripts and Java based tools taking care of building the annual release of the PHYTOBS dataset. The main stages are :
- Extracting SNO datasets produced by CNRS/University contributing teams from the Pelagos primary database, and generating the matching files in the standardised format.
- Reformatting the Quadrige extract provided by IFREMER and containing data produced by IFREMER contributors to make it compliant with the standardised format.
- Importing all files into the PHYTOBS database
- Generating the exports for the file download section of the BenthOBS data access web site.
- Generating the export destined to be deposited on the SeaNOE data repository.
Project Start
Category
Pipeline or Workflow
Current Status
Active
