ABiMS cluster hosts more than 522 bioinfomatic tools and 890 versions dedicated to sequence similarity search, genome/transcriptome assemblies, phylogeny, population genetics, metabarcoding, etc. (update: 07/2022)
ABiMS is part of the IFB NNCR Cluster. With the IFB, we share more and more components. We are now installing the tool through a central GitLab repository: https://gitlab.com/ifb-elixirfr/cluster/tools
The tools deploied at the same time on the 8 IFB cluster whole IFB Core Cluster, ABiMS.
All the tools installed come from either Conda or Singularity.
Please check our documentation: Conda / Singularity / Module
Since April 2020, ABiMS is providing a new RStudio instance : https://rstudio.sb-roscoff.fr
Note that this instance is the result of a strong collaboration with the IFB Core Cluster Task Force. It is a clone of the IFB rstudio server.
Please check our documentation: R / RStudio
You can now switch easily between R-Cli and RStudio since RStudio is using the R-Cli installed for SSH purpose.
Please check our documentation: Migrate from RStudio 2 R/Rscript
User can ask for specific tool/package installation or update by contacting our support
module avail