CLUSTER
The platform ABiMS offers resources around a dedicated data center (Marine Genomic Data Center).
This data center is destined to data storage and security, as well as their analyses.
It represents :
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2600 Core CPU handled by the scheduler SLURM,
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a secure data storage (RAID) of 2 PB
This infrastructure has been financed by multiple sources :
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Région Bretagne - BioGenOuest
-
Conseil Général - CG29
-
ANR projects
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Station Biologique de Roscoff: FR2424, UMR7139, UMR7144, UMR7150
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Investissements d'Avenir projects: EMBRC-France, IDEALG, Océanomics, IFB
-
GRSIBI projects.
In 2013, 90% of the CPU resources involved collaborative projects with at less one partner from the "Station Biologique de Roscoff"; 10 % were used for fully external projects.
Training Materials
Please have a look at this Documentation provided by the IFB NNCR Cluster TaskForce before using the Cluster.
With the IFB Core Cluster, we share all our pratices.
Resources
The available partitions are:
scontrol show partition sacctmgr list qos format=Name,Priority,MaxTRESPU%20
| Time out | Default resources | Max resources / user | Purpose | |
|---|---|---|---|---|
| fast | 24 hours | --cpu-per-task 1 --mem 2GB | cpu=250, mem=1000GB | Regular jobs |
| long | 30 days | --cpu-per-task 1 --mem 2GB | cpu=250, mem=1000GB | Long jobs |
| bigmem | 60 days | --cpu-per-task 1 --mem 2GB | mem=2.5TB | On demande. For treatements requiring a lot of RAM |
Differents types of node
sinfo -Nel --format "%.8N %.9R %.4c %.7z %.7m"
| NODELIST | PARTITION | CPUS | Socket:Core:Thread | MEMORY IN MB |
|---|---|---|---|---|
| n75 | fast | 254 | 2:127:1 | 257445 |
| n82 | fast | 30 | 2:15:1 | 128882 |
| n84 | fast | 30 | 2:15:1 | 128882 |
| n84 | long | 30 | 2:15:1 | 128882 |
| n86 | fast | 30 | 2:15:1 | 128882 |
| n86 | long | 30 | 2:15:1 | 128882 |
| n87 | fast | 30 | 2:15:1 | 112754 |
| n87 | long | 30 | 2:15:1 | 112754 |
| n88 | fast | 30 | 2:15:1 | 128882 |
| n88 | long | 30 | 2:15:1 | 128882 |
| n89 | fast | 30 | 2:15:1 | 128882 |
| n89 | long | 30 | 2:15:1 | 128882 |
| n90 | fast | 30 | 2:15:1 | 128882 |
| n90 | long | 30 | 2:15:1 | 128882 |
| n91 | fast | 30 | 2:15:1 | 128882 |
| n91 | long | 30 | 2:15:1 | 128882 |
| n92 | fast | 30 | 2:15:1 | 128882 |
| n92 | long | 30 | 2:15:1 | 128882 |
| n93 | fast | 30 | 2:15:1 | 128882 |
| n93 | long | 30 | 2:15:1 | 128882 |
| n94 | fast | 30 | 2:15:1 | 128882 |
| n94 | long | 30 | 2:15:1 | 128882 |
| n95 | fast | 30 | 2:15:1 | 128882 |
| n95 | long | 30 | 2:15:1 | 128882 |
| n96 | fast | 254 | 2:127:1 | 257445 |
| n96 | long | 254 | 2:127:1 | 257445 |
| n97 | fast | 254 | 2:127:1 | 257445 |
| n97 | long | 254 | 2:127:1 | 257445 |
| n98 | fast | 126 | 2:63:1 | 257468 |
| n98 | long | 126 | 2:63:1 | 257468 |
| n99 | bigmem | 80 | 4:10:2 | 1032076 |
| n100 | bigmem | 128 | 4:16:2 | 2064169 |
| n115 | fast | 46 | 2:23:1 | 257859 |
| n115 | long | 46 | 2:23:1 | 257859 |
| n117 | fast | 46 | 2:23:1 | 257859 |
| n117 | long | 46 | 2:23:1 | 257859 |
| n118 | fast | 46 | 2:23:1 | 257859 |
| n118 | long | 46 | 2:23:1 | 257859 |