CLUSTER

The platform ABiMS offers resources around a dedicated data center (Marine Genomic Data Center).
This data center is destined to data storage and security, as well as their analyses.
It represents :
  • 2600 Core CPU handled by the scheduler SLURM,
  • a secure data storage (RAID) of 2 PB
This infrastructure has been financed by multiple sources :
  • Région Bretagne - BioGenOuest
  • Conseil Général - CG29
  • ANR projects 
  • Station Biologique de Roscoff: FR2424, UMR7139, UMR7144, UMR7150
  • Investissements d'Avenir projects: EMBRC-France, IDEALG, Océanomics, IFB
  • GRSIBI projects.
In 2013, 90% of the CPU resources involved collaborative projects with at less one partner from the "Station Biologique de Roscoff"; 10 % were used for fully external projects.

Training Materials

Please have a look at this Documentation provided by the IFB NNCR Cluster TaskForce before using the Cluster.
With the IFB Core Cluster, we share all our pratices.

Resources

The available partitions are:
scontrol show partition
sacctmgr list qos format=Name,Priority,MaxTRESPU%20
  Time out Default resources Max resources / user Purpose
fast 24 hours --cpu-per-task 1 --mem 2GB cpu=250, mem=1000GB Regular jobs
long 30 days --cpu-per-task 1 --mem 2GB cpu=250, mem=1000GB Long jobs
bigmem 60 days --cpu-per-task 1 --mem 2GB mem=2.5TB On demande. For treatements requiring a lot of RAM

Differents types of node

sinfo -Nel --format "%.8N %.9R %.4c %.7z %.7m"
NODELIST PARTITION CPUS Socket:Core:Thread MEMORY IN MB
n75 fast 254 2:127:1 257445
n82 fast 30 2:15:1 128882
n84 fast 30 2:15:1 128882
n84 long 30 2:15:1 128882
n86 fast 30 2:15:1 128882
n86 long 30 2:15:1 128882
n87 fast 30 2:15:1 112754
n87 long 30 2:15:1 112754
n88 fast 30 2:15:1 128882
n88 long 30 2:15:1 128882
n89 fast 30 2:15:1 128882
n89 long 30 2:15:1 128882
n90 fast 30 2:15:1 128882
n90 long 30 2:15:1 128882
n91 fast 30 2:15:1 128882
n91 long 30 2:15:1 128882
n92 fast 30 2:15:1 128882
n92 long 30 2:15:1 128882
n93 fast 30 2:15:1 128882
n93 long 30 2:15:1 128882
n94 fast 30 2:15:1 128882
n94 long 30 2:15:1 128882
n95 fast 30 2:15:1 128882
n95 long 30 2:15:1 128882
n96 fast 254 2:127:1 257445
n96 long 254 2:127:1 257445
n97 fast 254 2:127:1 257445
n97 long 254 2:127:1 257445
n98 fast 126 2:63:1 257468
n98 long 126 2:63:1 257468
n99 bigmem 80 4:10:2 1032076
n100 bigmem 128 4:16:2 2064169
n115 fast 46 2:23:1 257859
n115 long 46 2:23:1 257859
n117 fast 46 2:23:1 257859
n117 long 46 2:23:1 257859
n118 fast 46 2:23:1 257859
n118 long 46 2:23:1 257859