CLUSTER

The platform ABiMS offers resources around a dedicated data center (Marine Genomic Data Center).
This data center is destined to data storage and security, as well as their analyses.
It represents :
  • 1600 Core CPU handled by the scheduler SLURM,
  • 900 Core CPU handled by the scheduler SGE (its migration to SLURM is in progress)
  • a secure data storage (RAID) of 2 PB
This infrastructure has been financed by multiple sources :
  • Région Bretagne - BioGenOuest
  • Conseil Général - CG29
  • ANR projects 
  • Station Biologique de Roscoff: FR2424, UMR7139, UMR7144, UMR7150
  • Investissements d'Avenir projects: EMBRC-France, IDEALG, Océanomics, IFB
  • GRSIBI projects.
In 2013, 90% of the CPU resources involved collaborative projects with at less one partner from the "Station Biologique de Roscoff"; 10 % were used for fully external projects.

Training Materials

Please have a look at this Documentation provided by the IFB NNCR Cluster TaskForce before using the Cluster.
With the IFB Core Cluster, we share all our pratices.

Resources

DIFFERENTS TYPES OF NODE

sinfo -Nel --format "%.8N %.9R %.4c %.7z %.7m"
NODELIST PARTITION CPUS Socket:Core:Thread MEMORY IN MB
n75 fast 254 2:127:1 257445
n82 fast 30 2:15:1 128882
n84 fast 30 2:15:1 128882
n84 long 30 2:15:1 128882
n86 fast 30 2:15:1 128882
n86 long 30 2:15:1 128882
n87 fast 30 2:15:1 112754
n87 long 30 2:15:1 112754
n88 fast 30 2:15:1 128882
n88 long 30 2:15:1 128882
n89 fast 30 2:15:1 128882
n89 long 30 2:15:1 128882
n90 fast 30 2:15:1 128882
n90 long 30 2:15:1 128882
n91 fast 30 2:15:1 128882
n91 long 30 2:15:1 128882
n92 fast 30 2:15:1 128882
n92 long 30 2:15:1 128882
n93 fast 30 2:15:1 128882
n93 long 30 2:15:1 128882
n94 fast 30 2:15:1 128882
n94 long 30 2:15:1 128882
n95 fast 30 2:15:1 128882
n95 long 30 2:15:1 128882
n96 fast 254 2:127:1 257445
n96 long 254 2:127:1 257445
n97 fast 254 2:127:1 257445
n97 long 254 2:127:1 257445
n98 fast 126 2:63:1 257468
n98 long 126 2:63:1 257468
n99 bigmem 80 4:10:2 1032076
n100 bigmem 128 4:16:2 2064169
n115 fast 46 2:23:1 257859
n115 long 46 2:23:1 257859
n117 fast 46 2:23:1 257859
n117 long 46 2:23:1 257859
n118 fast 46 2:23:1 257859
n118 long 46 2:23:1 257859
The available partitions are:
scontrol show partition
sacctmgr list qos format=Name,Priority,MaxTRESPU%20
  Time out Default resources Max resources / user Purpose
fast 24 hours --cpu-per-task 1 --mem 2GB cpu=200, mem=750GB Regular jobs
long 30 days --cpu-per-task 1 --mem 2GB cpu=200, mem=750GB Long jobs
bigmem 60 days --cpu-per-task 1 --mem 2GB mem=1.9TB On demande. For treatements requiring a lot of RAM