Projects

ABiMS is involved in several scientifics projects :

  • With the research teams from the "Station Biologique de Roscoff",
  • As well as partnerships with external teams (Paris, Caen, Nantes, Brest, Toulouse, Clermont-Ferrand, etc.),
  • And also several institutes (Universities, CEA, CNRS, UPMC, IFREMER,¬† INRA, INSERM, etc.).

Nationals projects

The platform ABiMS is involved in many national projects, including several from the "ANR Investissements d'Avenir":

  • EMBRIC H2020 (2015/2019):¬†European Marine Biological Research Infrastructure Cluster
  • ELIXIR Excellerate¬†H2020 (2015/2019):¬†implements ELIXIR infrastructure,¬†supports early operations of ELIXIR WP6 Marine metagenomics
  • EMBRC-France (2011/2020): coordination of marine model data integration and link with other IA projects like TefoR
  • IDEALG (2011/2020): coordination of analyses
  • OCEANOMICS (2012/2020): data integration
  • "Institut Fran√ßais de Bio-informatique" (2012/2020): link with platforms devoted to vegetal (URGI, CIRAD, etc.) and infrastructure layer actors

Scientific collaborates as part of ANR

  • ANR HAPAR / L. Guillou (01/10/2014 - 30/09/2018)
  • ANR SAMOSA / F. Partensky (2013/2017)
  • ANR ISOBAR / T. Broquet (2013/2017)
  • ANR Vibriogen / F. Le Roux (2011/2014)
  • ANR PELICAN / F. Partensky (2009/2013)
  • ANR Jeunes Chercheurs SEXSEAWEED / S. Coehlo (2012/2015)

Nationals projects INSU

  • PELAGOS V2 project stems from a collaborative work from "R√©seau des Stations et Observatoires Marins" (RESOMAR). It offers database management tools for collaborative work for the help in collaborative work, for biological data from pelagic compartment (microorganism and macroorganism). Two videos are published online in order to present the display interface and a dedicated extension for data analysis under Galaxy.
  • High-Frequency database (Pascal Morin).

Genomic annotations consortium

  • Brown seaweeds Ectocarpus siliculosus
  • Red seaweeds genome Chondus crispus
  • Little shark genome Scyliorhinus canicula (Sylvie Mazan team)

European projects

  • Information system and shared database from ASSEMBLE European project (2009-2012)
  • Infrastructure set up for genomic data management from ESFRI EMBRC project
  • Links with ELIXIR infrastructure