Citation system

Complete references to use as signature for the authors or co-authors ABiMS.

Principle : Downward addressing : Organism, laboratory, team and minimal address: postal code, town, country

  • CNRS officer :

CNRS, Sorbonne Université, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

  • Sorbonne Université officer :

Sorbonne Université, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

JOBIM format

ABiMS, FR2424 CNRS - Sorbonne Université, Station Biologique, Place Georges Teissier, 29680, Roscoff, France

Acknowledgement example

We are grateful to the Institut Français de Bioinformatique (ANR-11-INBS-0013), BioGenouest and the Roscoff Bioinformatics platform ABiMS ( for providing help and/or computing and/or storage resources... .



  • Laurence Garczarek, Ulysse Guyet, Hugo Doré, Gregory K. Farrant, Mark Hoebeke, Loraine Brillet-Guéguen, Antoine Bisch, Mathilde Ferrieux, Jukka Siltanen, Erwan Corre, Gildas Le Corguillé , Morgane Ratin, Frances D. Pitt, Martin Ostrowski, Maël Conan, Anne Siegel, Karine Labadie, Jean-Marc Aury, Patrick Wincker, David J. Scanlan and Frédéric Partensky. Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. 2020 Nucleic Acids Research, gkaa958,
  • Guillaume Dubrulle, Adeline Picot, Stéphanie Madec, Erwan Corre, Audrey Pawtowski, Riccardo Baroncelli, Michel Zivy, Thierry Balliau, Gaétan Le Floch, and Flora Pensec. Deciphering the infectious process of Colletotrichum lupini in lupin through transcriptomic and proteomic analysis. Microorganisms
  • Xi Liu, Frédéric Hérault, Christian Diot, Erwan Corre. Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific Mule and Hinny hybrids fed ad libitum and overfed.  BMC Genomics
  • Jean-Philippe Mevy, Beatrice Loriod, Xi Liu, Erwan Corre, Magali Torres, Michael Büttner, Anne Haguenauer, Ilja Marco Reiter, Catherine Fernandez, Thierry Gauquelin.  Downy oak (Quercus pubescens Willd.) response to climate change: transcriptome assembly, differential genes analysis and targeted metabolomics. Plants 2020, 9(9), 1149; 
  • Hugo Doré,Gregory K. Farrant,Ulysse Guyet,Julie Haguait,Florian Humily,Morgane Ratin, Frances D. Pitt,Martin Ostrowski,Christophe Six,Loraine Brillet-Guéguen,Mark Hoebeke, Antoine Bisch,Gildas Lecorguillé,Erwan Corre,Karine Labadie,Jean-Marc Aury, Patrick Wincker,Dong H. Choi,Jae H Noh,Damien Eveillard,David J. Scanlan, Frédéric Partensky,Laurence Garczarek. Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria.  Front. Microbiol. - Aquatic Microbiology,
  • Louis Benoist , Baptiste Houyvet, Joël Henry, Erwan Corre , Bruno Zanuttini and Céline Zatylny-Gaudin. Using in-depth in silico search to identify antimicrobials peptides from haemocytes in the cuttlefish Sepia officinalis after bacterial challenge. Mar. Drugs 2020, 18(9), 439;
  • Albane Jouault, Angélique Gobet, Marjolaine Simon, Emilie Portier, Morgan Perennou, Erwan Corre, Fanny Gaillard, Eric Duchaud, David Vallenet, Gurvan Michel, Yannick Fleury Alexis Bazire Alain Dufour. Alterocin is an antibiofilm protein secreted by Pseudoalteromonas sp. 3J6. AEM
  • Benoist, Louis; Corre, Erwan; Bernay, Benoit; Henry, Joël; Zatylny-Gaudin, Céline .   Omic analysis of Sepia officinalis white body: new insights into multifunctionality and haematopoiesis regulation" . Journal proteome research .
  • Ulysse Guyet, Ngoc A. Nguyen, Hugo Doré, Julie Haguait, Justine Pittera, Maël Conan, Morgane Ratin, Erwan Corre, Gildas Le Corguillé, Loraine Brillet-Guéguen, Mark Hoebeke, Christophe Six, Claudia Steglich, Anne Siegel, Damien Eveillard, Frédéric Partensky, Laurence Garczarek. Synergic effects of temperature and irradiance on the physiology of the marine Synechococcus strain WH7803. Frontiers in Microbiology, section Aquatic Microbiology.
  • L’Haridon S, Haroun H, Corre E, Roussel E, Morgane C, Pignet P, Balie`re C, la Cono V, Jebbar M, Yakimov M, Toffin L, Methanohalophilus profundi sp. nov., a methylotrophic halophilic piezophilic methanogen isolated from a deep hypersaline anoxic basin, Systematic and Applied Microbiology (2020), doi:
  • Anna P Muir, Stanislas F Dubois, Rebecca E Ross, Louise B Firth, Antony M Knights, Fernando P Lima, Rui Seabra, Erwan Corre, Gildas Le Corguillé, Flavia LD Nunes. Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.).  BMVCevolutionary biology.
  • N'Zi Daniel Koua, Jésus Nú ñez-Rodriguez, Julie Orjuela, Céline Zatylny- Gaudin, Marie-Pierre Dubos, Benoît Bernay, Julien Pontin, Erwan Corre, Joël Henry. Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829). General and Comparative Endocrinology.
  • S. Dupont; A. Lokmer; E. Corre; J.-C. Auguet; B. Petton; E. Toulza; C. Montagnani; G. Tanguy; D. Pecqueur; C. Salmeron; L. Guillou; C. Desnues; B. La Scola; J. Bou Khalil; J. de Lorgeril; G. Mitta; Y. Gueguen; Jean-Michel Escoubas. Oyster hemolymph is a complex and dynamic ecosystem hosting bacteria, protists and viruses.
  • Ruibo Cai, Ehsan Kayal, Catharina Alves-de-Souza, Estelle Bigeard, Erwan Corre, Christian Jeanthon, Dominique Marie, Betina M. Porcel, Raffaele Siano, Jeremy Szymczak, Matthias Wolf & Laure Guillou . Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach. Scientific Reports volume 10, Article number: 2531 (2020).
  • Bertille Burgunter-Delamare, Hetty KleinJan, Clemence Frioux, Enora Fremy, Margot Wagner, Erwan Corre, Alicia Le Salver, Cédric Leroux, Catherine Leblanc, Catherine Boyen, Anne Siegel, Simon M. Dittami.  Metabolic complementarity between a brown alga and associated cultivable bacteria provide indications of mutually beneficial interactions. Frontiers in Marine sciences  Front. Mar. Sci., 21 February 2020 |
  • Dittami, Simon; Corre, Erwan; Guéguen, Loraine; Pontoizeau, Noé; Aite, Meziane; Avia, Komlan; Caron, Christophe; Cho, Chung Hyun; Collén, Jonas; Cormier, Alexandre; Delage, Ludovic; Doubleau, Sylvie; Frioux , Clémence; Gobet, Angélique; González-Navarrete, Irene; Grosillier, Agnes; Hervé, Cécile; Jollivet, Didier; Kleinjan, Hetty; Leblance, Catherine; Lipinska, Agnieszka; Liu, Xi; Marie, Dominique; Markov, Gabriel; Minoche, André; Monsoor, Misharl; Pericard, Pierre; Perrineau, Marie-Mathilde; Peters, Akira; Siegel, Anne; Siméon, Amandine; Trottier, Camille; Yoon, Hwan Su; Himmelbauer, Heinz; Boyen, Catherine; Tonon, Thierry. The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga. Marine Genomics.
  • Arnaud Belcour, Jean Girard, Méziane Aite, Ludovic Delage, Camille Trottier, Charlotte Marteau, Cédric Leroux, Simon M. Dittami, Pierre Sauleau, Erwan Corre, Jacques Nicolas, Catherine Boyen, Catherine Leblanc, Jonas Collén, Anne Siegel, Gabriel V. Markov. Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift. accepted in iScience, Volume 23, Issue 2, 21 February 2020,



  • Cátia Monteiro, Sandra Heinrich, Inka Bartsch, Klaus Valentin, Erwan Corre, Jonas Collén, Lars Harms, Gernot Glöckner and Kai Bischof. Temperature Modulates Sex-Biased Gene Expression in the Gametophytes of the Kelp Saccharina latissima. Frontiers in Marine Science. 1 December 2019 | Volume 6 | Article 769 doi: 10.3389/fmars.2019.00769 
  • Elham Karimi, Enora Geslain, Hetty KleinJan, Gwenn Tanguy, Erwan Legeay, Erwan Corre, Simon M Dittami.  Genome sequences of seventy-two bacterial strains isolated from Ectocarpus subulatus: a resource for algal microbiology. Genome Biology and Evolution, 2019 . evz278,
  • Monteiro, Catia; Li, Huiru; Bischof, Kai; Bartsch, Inka; Valentin, Klaus; Corre, Erwan; Collen, Jonas; Harms, Lars; Glöckner, Gernot; Heinrich, Sandra. Is local adaptation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?" BMC Plant Biology .
  • Nègre, Aite, Belcour, Frioux, Brillet-Guéguen, Liu, Bordron, Godfroy, Lipinska, Leblanc, Siegel, Dittami, Corre, and Markov, “Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus,” Antioxidants, vol. 8, no. 11, pp. 564–23, Nov. 2019.DOI: 10.3390/antiox8110564
  • Annie Lebreton; Erwan Corre; Jean-Luc Jany; Loraine Brillet-Guegen; Carlos Perez-Arques; Victoriano Garre; Misharl Monsoor; Robert Debuchy; Christophe Le Meur; Emmanuel Coton; Georges Barbier; Laurence Meslet Cladiere. 2019. Comparative genomics applied to Mucor species with different lifestyles. Accepted in BMC Genomics
  • Dittami SM, Arboleda E, Auguet J-C, Bigalke A, Briand E, Cárdenas P, Cardini U, Decelle J, Engelen A, Eveillard D, Gachon CMM, Griffiths S, Harder T, Kayal E, Kazamia E, Lallier FH, Media M, Marzinelli EM, Morganti T, Pons LN, Prado S, Pintado J, Saha M, Selosse M-A, Skillings D, Stock W, Sunagawa S, Toulza E, Vorobev A, Leblanc C, Not F. 2019. A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions.PeerJ Preprints: No. e27519v1.
  • Ohdera A, Ames CL, Dikow RB. Kayal E, Chiodin M, Busby B, La S, Pirro S, Collins AG, Medina M, Ryan JF. 2019. Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa). GigaScience 8(7): giz069.
  • Kayal M, Lewis H, Ballard J,Kayal E. 2019. Humanity and the 21st century’s resource gauntlet: a commentary on Ripple et al.'s article “World scientists’ warning to humanity: a second notice”.Rethinking Ecology. doi: 10.3897/rethinkingecology.4.32116
  • Marjorie Couton, Thierry Comtet, Sabrina Le Cam, Erwan Corre, Frédérique Viard. Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens. accepted in  Management of Biological Invasions.
  • Alexandra Rahmani, Erwan Corre,Gaëlle Richard,Adeline Bidauld,Christophe Lambert, Louisi Oliveira, Cristiane Thompson, Fabiano Thompson, Vianney Pichereau, Christine Paillard. Transcriptomic analysis of clam extra pallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development. Fish & Shellfish Immunology.
  • Huiru Li, Cátia Monteiro, Sandra Heinrich, Inka Bartsch, Klaus Valentin, Lars Harms, Gernot Glöckne, Erwan Corre, Kai Bischof. Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics. Physiologia Plantarum,
  • François Thomas, Erwan Corre & Aurélie Cébron .Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil. The ISME Journal (2019).
  • Rombouts, I., Simon, N., Aubert, A., Cariou, T., Feunteun, E., Guérin, L., Hoebeke, M., McQuatters-Gollop, A., Rigaut-Jalabert, F., Artigas, L.F.  Changes in marine phytoplankton diversity: assessment under the Marine Strategy Framework Directive. Ecological Indicators.
  • Laure Arsenieff, Nathalie Simon, Fabienne Rigaut-Jalabert, Florence Le Gall, Samuel Chaffron, Erwan Corre, Emmanuelle Com, Estelle Bigeard, Anne-Claire Baudoux. First Viruses Infecting the Marine Diatom Guinardia delicatula. Frontiers in Microbiology, section Aquatic Microbiology. 09 January 2019 |


  • L Reisky et al.,  A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan. Nature chemical …, 2019
  • B Pilgaard et al. Proteomic enzyme analysis of the marine fungus Paradendryphiella salina reveals alginate lyase as a minimal adaptation strategy for brown algae …- Scientific reports, 2019 - 
  • J Le Luyere et al. ,  Whole transcriptome sequencing and biomineralization gene architecture associated with cultured pearl quality traits in the pearl oyster, Pinctada … BMC genomics…, 2019 
  • P Debeljak et al. Microbial iron metabolism as revealed by gene expression profiles in contrasted Southern Ocean regimes. Environmental Microbiology.
  • E Ruppé et al. Prediction of the intestinal resistome by a three-dimensional structure-based method. Nature Microbiology
  • Z Han et al. Termination of non-coding transcription in yeast relies on both a CTD-interaction domain and a CTD-mimic in Sen1 BioRxiv 2019
  • W Santana-Garcia et al. ,RSAT Var-tools: an accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding
  • J Vidal-Dupiol et al., Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta.  bioRxiv, 2019 -
  • MM Sandinet et al., Time calibrated morpho-molecular classification of Nassellaria (Radiolaria) - Protist, 2019 - 
  • D Piel et al. Selection of Vibrio crassostreae relies on a plasmid expressing a type 6 secretion system cytotoxic for host immune cells  Environmental Microbiology  …, 2019 - 
  • S Lambert et al.,  Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations.  The ISME …, 2019 -
  • ECP Catãoet al., Shear stress as a major driver of marine biofilm communities in the NW Mediterranean Sea. Frontiers inMicrobiology, 2019 
  • A Gutierrez-Rodriguez et al., High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding.  The ISME …, 2019 
  • M Tragin, D Vaulot .  Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding - Scientific reports, 2019 
  • S Le Cam et al. , A genome‐wide investigation of the worldwide invader Sargassum muticum shows high success albeit (almost) no genetic diversity. Evolutionary application 2019
  • A Arun et al., Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae. eLife. 2019

Oral communications/ Posters

  • Les réseaux métaboliques à l’échelle des génomes : des outils pour intégrer les données et ouvrir de nouvelles questions biologiques. Delphine Negre et Gabriel Markov. Gen2Bio, March 2019, Angers (FR)
  • Update from the Galaxy Comminity. Gruening B. and Le Corguillé G. ELIXIR All-Hands, 17 Jun 2019, Lisbonne (PL)
  • Workflow4Metabolomics: an international computing infrastructure for Metabolomics. Pétéra M, Dallet R,  Le Corguillé G, et al. Galaxy Community Conference (GCC2019). June 2019. Freiburg (DE).
  • Metabolomics data analysis. Pétéra  M, Le Corguillé G, et al. Galaxy Community Conference (GCC2019). June 2019. Freiburg (DE). Training session



  • Jacquemot L., Bettarel Y., Monjol J. , Corre E., Halary S. , Desnues C., Ferrier-Pagès C., Bouvier T. , Baudoux A-C. Therapeutic potential of a new jumbo phage that infects the coral pathogen Vibrio coralliilyticus . Front. Microbiol. | doi: 10.3389/fmicb.2018.02501
  • Baptiste Houyvet; Bruno Zanuttini; Erwan Corre; Gildas Le Corguillé; Joël Henry; Céline Zatylny-Gaudin. "Design of antimicrobial peptides from a cuttlefish database ». Amino Acids. 2018 Nov;50(11):1573-1582. doi: 10.1007/s00726-018-2633-4
  • Ehsan Kayal,Bastian Bentlage,,M. Sabrina Pankey, Aki H. Ohdera,Monica Medina, David C. Plachetzki, Allen G. Collins and Joseph F. Ryan. Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits. BMC Evolutionary Biology201818:68.
  • Annie Lebreton, Laurence Meslet-Cladière, Stéphanie Morin-Sardin, Emmanuel Coton, Jean-Luc Jany, Georges Barbier, Erwan Corre .Comparative analysis of five Mucor species transcriptomes. 2018.Genomics.
  • Soleilhac, E.; Brillet-Guéguen, L.; Roussel, V.; Prudent, R.; Touquet, B.; Dass, S.; Aci-Sèche, S.; Kasam, V.; Barette, C.; Imberty, A.; Breton, V.; Vantard, M.; Horvath, D.; Botté, C.; Tardieux, I.; Roy, S.; Maréchal, E.; Lafanechère, L. Specific Targeting of Plant and Apicomplexa Parasite Tubulin through Differential Screening Using In Silico and Assay-Based Approaches. Int. J. Mol. Sci. 2018, 19, 3085.
  • Sarah Farhat, Isabelle Florent, Benjamin Noel, Ehsan Kayal, Corinne Da Silva, Estelle Bigeard, Adriana Alberti, Karine Labadie, Erwan Corre, Jean-Marc Aury, Stephane Rombauts, Patrick Wincker, Laure Guillou, Betina M. Porcel.  Comparative time-scale gene expression analysis highlights the infection processes of two Amoebophrya strains. Front. Microbiol., 02 October 2018 | 
  • Simon M. Dittami, Erwan Corre, Loraine Brillet-Gueguen, Noe Pontoizeau, Meziane Aite, Komlan Avia, Christophe Caron, Chung Hyun Cho, Jonas Collen, Alexandre Cormier, Ludovic Delage, Sylvie Doubleau, Clemence Frioux, Angelique Gobet, Irene Gonzalez-Navarrete, Agnes Groisillier, Cecile Herve, Didier Jollivet, Hetty KleinJan, Catherine Leblanc, Agnieszka P. Lipinska, Xi Liu, Dominique Marie, Gabriel V. Markov, Andre E. Minoche, Misharl Monsoor, Pierre Pericard, Marie-Mathilde Perrineau, Akira F. Peters, Anne Siegel, Amandine Simeon, Camille Trottier, Hwan So Yoon, Heinz Himmelbauer, Catherine Boyen, Thierry Tonon (2018) The genome of Ectocarpus subulatus highlights unique mechanisms for stress tolerance in brown algae. bioRxiv, 307165. doi:10.1101/307165
  • Alexandre Leduc; Céline Zatylny-Gaudin, PhD; Marie Robert, PhD; Erwan Corre, PhD; Gildas Le Corguillé; Hélène Castel, PhD; Antoine Lefevre-Scelles, PhD; Vincent Fournier, PhD; Enric Gisbert, PhD; Karl Blyth Andree, PhD; joel henry, PhD. Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets.BMC Genomics (2018) 19:396
  • Arnaud Meng; Camille Marchet; Erwan Corre; Pierre Peterlongo; Adriana Alberti; Corinne Da Silva; Patrick Wincker; Eric Pelletier; Ian Probert; Johan Decelle; Stéphane Le Crom; Fabrice Not; Lucie Bittner. A de novo approach to disentangle/decouple partner identity and function in holobiont systems. Microbiome may 2018.
  • Héloïse Chassé,  Julie Aubert, Sandrine Boulben; Gildas Le Corguillé; Erwan Corre, Patrick Cormier, Julia Morales. 2018. "Translatome analysis at oocyte-to-embryo transition in sea urchin ». NAR .DOI:10.1093/nar/gky258 
  • Arnaud Meng, Erwan Corre, Ian Probert, Andres Gutierrez-Rodriguez, Raffaele Siano, Anita Annamale, Adriana Alberti, Corinne Da Silva, Patrick Wincker, Stephane Le Crom, Fabrice Not, Lucie Bittner. Analysis Of The Genomic Basis Of Functional Diversity In Dinoflagellates Using A Transcriptome-Based Sequence Similarity Network. Molecular Ecology.
  • Jean-Philippe Buffet, Erwan Corre, Evelyne Duvernois-Berthet, Jérôme Fournier, and Pascal Jean Lopez. Adhesive gland transcriptomics uncovers a diversity of proteins and enzymes involved in glue formation in marine tube-building polychaetes.Acta Biomaterialia.DOI:10.1016/j.actbio.2018.03.037
  • Stéphane L’Haridon, Erwan Corre, Yue Guan, Manikandan Vinu, Violetta La Cono, Michail Yakimov, Ulrich Stingl, Laurent Toffin and Mohamed Jebbar. Complete Genome Sequence of the Halophilic Methylotrophic Methanogen. Archaeon Methanohalophilus portucalensis Strain FDF-1^T. Genome Announc. January 2018 6:e01482-17; doi:10.1128/genomeA.01482-17  


  • B.Gschloessl et al.. De novo genome and transcriptome resources of the Adzuki bean borer Ostrinia scapulalis (Lepidoptera: Crambidae). Data in Brief, Volume 17, April 2018, Pages 781-787
  • Eloïse Vanhoenacker et al.. Stabilizing selection, mutational bias, and the evolution of sex. Evolution. 11 July 2018.
  • Angélique Gobet et al.. Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore. Microbiome20186:60.
  • Komlan Avia et al.. Genetic Diversity in the UV Sex Chromosomes of the Brown Alga Ectocarpus. Genes 2018, 9(6), 286;
  • Alexandre Cormier et al.. The complete mitochondrial genome of Gammarus roeselii (Crustacea, Amphipoda): insights into mitogenome plasticity and evolution. December 2018, Volume 825, Issue 1, pp 197–210
  • Alok Arun et al.. Convergent recruitment of life cycle regulators to direct sporophyte development in two eukaryotic supergroups.
  • Théophile Grébert et al.. Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. PNAS February 27, 2018 115 (9) E2010-E2019;
  • Justine Pittera et al.. Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus. Environmental microbiology. 10 November 2017
  • Akira Kuwata et al.. Bolidophyceae, a Sister Picoplanktonic Group of Diatoms – A Review. Front. Mar. Sci. 29 October 2018.
  • Catherine Gérikas Ribeiro et al.. Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria. The ISME Journal 12, 1360–1374 (2018)
  • Sheree Yau et al.. Mantoniella Beaufortii and Mantoniella Baffinensis sp. nov. (Mamiellales, Mamiellophyceae), Two New Green Algal Species from the High Arctic.
  • Nga Thi Thuy Nguyen et al.. RSAT 2018: regulatory sequence analysis tools 20th anniversary. Nucleic Acids Research, Volume 46, Issue W1, 2 July 2018, Pages W209–W214,
  • Margot Tragin & Daniel Vaulot. Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset. Scientific Reports 8, Article number: 14020 (2018)
  • Maxime Bruto et al.. Ancestral gene acquisition as the key to virulence potential in environmental Vibrio populations. The ISME Journal 12, 2954–2966 (2018)
  • Sophie Rodrigues et al.. Relation between Biofilm and Virulence in Vibrio tapetis: A Transcriptomic Study. Pathogens 2018, 7(4), 92;
  • Arnaud Belcour et al.. Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift.
  • Diala Abu Awad Denis Roze. Effects of partial selfing on the equilibrium genetic variance, mutation load, and inbreeding depression under stabilizing selection. Evolution. 14 February 2018.
  • B. Gschloessl et al.. Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae). Molecular Ecology Resources. 20 January 2018
  • Ewan Harney et al.. Transcriptome based SNP discovery and validation for parentage assignment in hatchery progeny of the European abalone Haliotis tuberculata. Aquaculture. Volume 491, 1 April 2018, Pages 105-113.



  • Baptiste Houyvet; Yolande Bouchon-Navaro; Bouchon Claude; Didier Goux; Benoit Bernay; Erwan Corre; Celine Zatylny-Gaudin. Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: functional and structural study of pteroicidin-<alpha>. Fish and Shellfish Immunology. 02/11/2017.DOI:10.1016/j.fsi.2017.11.003
  • Simon M. Dittami, Erwan Corre. Detection of bacterial contaminants and hybrid sequences in the genome of the kelp  Saccharina japonica using Taxoblast. accepted in  PeerJ. 30/10/2017. DOI:10.7717/peerj.4073
  • Björn Grüning, Ryan Dale, Andreas Sjödin, Jillian Rowe, Brad A. Chapman, Christopher H. Tomkins-Tinch, Renan Valieris, The Bioconda Team (Gildas le Corguillé inside), Johannes Köster.Bioconda: A sustainable and comprehensive software distribution for the life sciences. bioRxiv 207092, October 2017. doi: Methods 2018 :
  • Bérénice Batut, Saskia Hiltemann, Andrea Bagnacani, Dannon Baker, Vivek Bhardwaj, Clemens Blank, Anthony Bretaudeau, Loraine Guéguen, Martin Čech, John Chilton, Dave Clements, Olivia Doppelt-Azeroual, Anika Erxleben, Mallory Freeberg, Simon Gladman, Youri Hoogstrate, Hans-Rudolf Hotz, Torsten Houwaart, Pratik Jagtap, Delphine Lariviere, Gildas Le Corguillé, Thomas Manke, Fabien Mareuil, Fidel Ramírez, Devon Ryan, Florian Sigloch, Nicola Soranzo, Joachim Wolff, Pavankumar Videm, Markus Wolfien, Aisanjiang Wubuli, Dilmurat Yusuf, Rolf Backofen, Anton Nekrutenko, Björn Grüning. Community-driven data analysis training for biology. Cell Systems. Volume 6, Issue 6, p752–758.e1, 27 June 2018. bioRxiv 225680; doi:
  • Adriana Lopes dos Santos, Thibaut Pollina, Priscillia Gourvila, Erwan Corre,  Dominique Marie , José Luis Garrido , Francisco Rodríguez , Mary-Hélène Noële, Daniel Vaulot and Wenche Eikrem. Chloropicophyceae, a new class of picoplanktonic prasinophytes from the sunlit oceans.Scientific Reports accepted (1):1-20 · October 2017. DOI: 10.1038/s41598-017-12412-5.
  • Ehsan Kayal, Bastian Bentlage, M. Sabrina Pankey, Aki H. Ohdera, Monica Medina, David C. Plachetzki, Allen G. Collins, Joseph F. Ryan. Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits. 2017. Accepted in BMC Evolutionary Biology.
  • Lina-Juana Dolch, Guillaume Tourcier, Mariette Bedhomme, Séverine Collin, Leonardo Magneschi, Melissa Conte, Khawla Seddiki, Josselin Lupette, Erwan Corre, Dimitris Petroutsos, Laurent Fourage, Giovanni Finazzi, Fabrice Rébeillé, Juliette Jouhet, Patrick McGuinn, Eric Maréchal. Nitric oxide mediates nitrite-sensing and adaptation and triggers a remodeling of glycerolipids in Phaeodactylum . Plant Physiology. DOI:
  • Thomas F, Bordron P, Eveillard D, Michel G (2017) Gene expression analysis of of Zobellia galactanivorans   during the degradation of algal polysaccharides reveals both  substrate-specific and shared transcriptome-wide responses.  Frontiers in Microbiology, in the press. doi:  10.3389/fmicb.2017.01808
  • Guitton Y, Tremblay-Franco M, Le Corguillé G, Martin JF, Pétéra M, Roger-Mele P, Delabrière A, Goulitquer S, Monsoor M, Duperier C, Canlet C, Servien R, Tardivel P, Caron C, Giacomoni F, Thévenot. E. 2017. Create, run, share, publish, and reference your LC-MS, FIA-MS, GC-MS, and NMR data analysis workflows with the Workflow4Metabolomics 3.0 Galaxy online infrastructure for metabolomics. Int J Biochem Cell Biol. 2017 Jul 12. pii: S1357-2725(17)30157-7. doi: 10.1016/j.biocel.2017.07.002.
  • Jean-Yves Toullec, Erwan Corre, Perrine Mandon, Marcelo Gonzalez-Aravena, Céline Ollivaux and Chi-Ying Lee. Characterization of the neuropeptidome of a Southern Ocean decapod, the shrimp Chorismus antarcticus. Focus on a new decapod ITP-like belonging to the CHH peptide family. General and Comparative Endocrinology ;252:60-78 · July 2017. DOI: 10.1016/j.ygcen.2017.07.015
  • Petra ten Hoopen; Robert D Finn; Lars Ailo Bongo; Erwan Corre; Bruno Fosso; Folker Meyer; Alex Mitchell; Eric Pelletier; Graziano Pesole; Monica Santamaria; Nils Peder Willassen; Guy Cochrane.2017. The metagenomic data life-cycle: standards and best practices. GigaScience · June 2017. DOI: 10.1093/gigascience/gix047 
  • Ritter A., Cabioch L., Brillet-Guéguen L., Corre E., Cosse A., Dartevelle L., Duruflé H., Fasshauer C., Goulitquer S., Thomas F., Correa J. A., Potin P, Faugeron S. and Leblanc C. (2017). Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata. PLOS ONE 12(3): e0173315. doi: 10.1371/journal.pone.0173315
  • Paul Simion, Hervé Philippe, Denis Baurain, Muriel Jager, Daniel J. Richter, Arnaud Di Franco, Béatrice Roure, Nori Satoh, Éric Quéinnec, Alexander Ereskowsky, Pascal Lapébie, Erwan Corre, Frédéric Delsuc, Nicole King, Gert Wörheide & Michaël Manuel A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals. Current Biology. Volume 27, Issue 7, 3 April 2017, Pages 958-967.
  • Stephane L'Haridon, Erwan Corre, Yue Guan, Manikandan Vinu, Violetta La Cono, Michail Yakimov, Ulrich Stingl, Laurent Toffin, and Mohamed Jebbar. 2017. Complete genome sequence of Methanohalophilus halophilus DSM 3094T. Genome Announcements 5(7) · February 2017. DOI: 10.1128/genomeA.01604-16.
  • Dorrell, Richard G and Gile, Gillian and McCallum, Giselle and Méheust, Raphaël and Bapteste, Eric P and Klinger, Christen M and Brillet-Guéguen, Loraine and Freeman, Katalina D and Richter, Daniel J and Bowler, Chris. (2017). Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome. eLife, 6, [e23717]. DOI: 10.7554/eLife.23717
  • van Rijswijk M, Beirnaert C, Caron C, Le Corguillé G., et al. The future of metabolomics in ELIXIR. F1000Research 2017, 6 (ELIXIR):1649 (doi: 10.12688/f1000research.12342.1)

Oral communications/ Posters

  • Barbeyron T, Brillet-Guéguen L, Carré W., Carrière C, Caron C, Czjzek M, Hoebeke M, Michel G. Matching the diversity of sulfated biomolecules: creation of a classification database for sulfatases reflecting their substrate specificity. EnzyBio 2017 (GT Enzymes – SFBBM), Le Croisic (9-12 mai 2017). Oral presentation.
  • Houyvet B., Bouchon-Navaro Y., Bouchon C., Bernay B., Corre E., Zatylny-Gaudin C .  Antimicrobial peptides in venomous fish Pterois volitans. 7th International Meeting on Antimicrobial Peptides IMAP University of Copenhagen (Denmark) August 25 -27, 2017.
  • Houyvet B., Zanuttini B., Corre E., Henry J., Zatylny-Gaudin C. Design of antimicrobial peptides from a cuttlefish database. 7th International Meeting on Antimicrobial Peptides IMAP University of Copenhagen ( Denmark)  August 25 -27, 2017
  • Ehsan Kayal, Lourdes Velo Suarez,Laure Guillou, Erwan Corre, Christophe Six, Estelle Bigeard, Dominique Marie. Possible hijacking of the host plastids by an intracellular parasite (Amoebophrya sp., Syndiniales) of microalgae. 15th International Congress of Protistology. 30/7 4/08/2017 Prague Czech Republic
  • Annie Lebreton, Stéphanie Morin-Sardin, Laurence Meslet-Cladière, Jean-Luc Jany, Emmanuel Coton, Georges Barbier, Erwan Corre. Transcriptional studies of five fungal Mucor species. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), 2017. Lille, 3-6 juillet 2017.
  • Jean-Michel Escoubas, Samuel Dupont, Bruno Petton, Ana Lokmer, Eve Toulza, Caroline Montagnani, David Pecqueur, Laure Guillou, Christelle Desnues, Julien De Lorgeril, Yannick Gueguen, Guillaume Mitta and Erwan Core. A holistic approach to investigate the establishment and dynamics of the blood-microbiota (bacteria, protists and viruses) in a marine invertebrate. IWH17: Interdisciplinary Workshop on Holobionts. University of Bordeaux. BORDEAUX, France, November 6-8, 2017
  • Gobet, A., Corre, E., Correc, G., Delage, L., Dittami, S., Kleinjan, H., Rousvoal, S., Tanguy, G. and Leblanc, C..Characterization of the epiphytic bacterial community associated to the kelp laminaria digitata. IPC 11 11th International Phycological Congress. 13-19 August 2017. Szczecin, Poland.
  • Fabrice Not,Emilie Villar,Arnaud Meng,Charles Bachy,Christophe Six,Lucie Bittner,Cédric Leroux,Adriana Alberti,Damien Eveillar, Erwan Corre. Ecophysiology of plankton photosymbiosis. 15th International Congress of Protistology. 30/7 4/08/2017  Prague Czech Republic
  • Gabriel MARKOV, Jean GIRARD, Camille TROTTIER, Cédric LEROUX, Elodie LACROIX, Ludovic DELAGE, Jonas COLLÉN, Simon DITTAMI, Erwan CORRE, Catherine BOYEN, Anne SIEGEL, Catherine LEBLANC. Patchwork evolution of cholesterol biosynthetic pathway in the model red alga Chondrus crispus. Symposium Substances Naturelles ICSN-UPSACLAY (15ème Symposium ICSN).Gif-sur-Yvette, IMAGIF, 29 et 30 juin 2017.
  • Markov G., Girard J., Trottier C., Guéguen L., Leroux C., Lacroix E., Delage L., Collén J., Dittami S., Corre E., Boyen C., Siegel A., Leblanc C. (2017). Patchwork evolution of metabolic pathways in red and brown macroalgae. Communication orale, 8th annual meeting of the EFOR network, Algae Workshop, 3d May 2017, Paris.
  • THOMAS François, CORRE Erwan, CEBRON Aurélie. DNA-SIP and metagenomic revealsshifts in active phenanthrene-degrading bacteria of rhizosphere and bulk soil from a historically contaminated site. 14th Symposium on Bacterial Genetics and Ecology "Talking with the neighbours" 4–8 June 2017. Aberdeen, Scotland
  • Laure Guillou, Erwan Corre, Christophe Six, Lourdes Velo Suarez, Ehsan Kayal. Possible hijacking of the host plastids by an intracellular parasite (Amoebophrya spp., Syndiniales) of microalgae. Microbiology Society 3-7April2017. Edinburgh UK 
  • Poster: Barbeyron T, Brillet-Guéguen L, Carré W., Carrière C, Caron C, Czjzek M, Hoebeke M, Michel G. Matching the diversity of sulfated biomolecules: creation of a classification database for sulfatases reflecting their substrate specificity. CBM12 - The 12th Carbohydrate Bioengineering Meeting, Vienna, Austria (April 23-26, 2017).
  • Hugo Doré, Mark Hoebeke. Cyanorak V2: Un système d’information pour la comparaison des génomes des picocyanobactéries marines. Gen2Bio 2017 - Nantes. Oral presentation.
  • Hugo DORE, Gregory FARRANT, Frédéric PARTENSKY, Florian HUMILY, Morgane RATIN, Antoine BISCH, Loraine GUÉGUEN, Mark HOEBEKE, Erwann CORRE, Gildas LE CORGUILLÉ, David J. SCANLAN and Laurence GARCZAREK. Genomic bases of long-term adaptation to environmental conditions in Prochlorococcus and Synechococcus. Annual Conference of the Microbiology Society, Edinburgh, April 2017. Oral presentation.
  • Gobet A., Corre E., Correc G., Delage L., Dittami S., Kleinjan H., Rousvoal S., Tanguy G. and Leblanc C. Characterization of the epiphytic bacterial community associated to the kelp Laminaria digitata.- 11th International Phycological Congress, 13-19 August 2017, Szczecin, Poland
  • Gildas Le Corguillé, Franck Giacomoni, Pierrick Roger-Mele, Christophe Duperier, Mélanie Pétéra, Yann Guitton, Marie Tremblay-Franco, Jean-François Martin, Cécile Canlet, Alexis Delabrière, Etienne Thévenot, Christophe Caron. Workflow4Metabolomics:Towards an international computing infrastructure and a tools showcase for Metabolomics. GCC2017, Montepellier, June 2017. Oral presentation.