Citation system
Complete references to use as signature for the authors or co-authors ABiMS.
Principle : Downward addressing : Organism, laboratory, team and minimal address: postal code, town, country
CNRS, Sorbonne Université, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France
- Sorbonne Université officer :
Sorbonne Université, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France
JOBIM format
ABiMS, FR2424 CNRS - Sorbonne Université, Station Biologique, Place Georges Teissier, 29680, Roscoff, France
Acknowledgement example
We are grateful to the Roscoff Bioinformatics platform ABiMS (http://abims.sb-roscoff.fr), part of the Institut Français de Bioinformatique (ANR-11-INBS-0013) and BioGenouest network, for providing help and/or computing and/or storage resources... .
Publications
- Daryna Zavadska, Nicolas Henry, Adrià Auladell,Cédric Berney, Daniel J. Richter. On the relationship between protist metabarcoding and protist metagenome-assembled genomes. https://www.biorxiv.org/. doi: https://doi.org/10.1101/2023.10.09.561583
- Choquet M, Lenner F, Cocco A, Toullec G, Corre E, Toullec JY, Wallberg A. Comparative population transcriptomics provide new insight into the evolutionary history and adaptive potential of World Ocean krill. Mol Biol Evol. 2023 Oct 10:msad225. doi: 10.1093/molbev/msad225. Epub ahead of print. PMID: 37816123.
- Kaneko, H., Endo, H., Henry, N. et al. Predicting global distributions of eukaryotic plankton communities from satellite data. ISME COMMUN. 3, 101 (2023). https://doi.org/10.1038/s43705-023-00308-7
- Stéphane Mauger, Aurélien Baud, Gildas Le Corguillé, Gwenn Tanguy, Erwan Legeay, Emeline Creis, Myriam Valero, Philippe Potin, Christophe Destombe. Genetic resources of macroalgae: Development of an efficient method using microsatellite markers in non-model organisms, Algal Research, Volume 75,2023,103251,ISSN 2211-9264,https://doi.org/10.1016/j.algal.2023.103251
- Federico M. Ibarbalz, Nicolas Henry, Frédéric Mahé, Mathieu Ardyna, Adriana Zingone, Eleonora Scalco, Connie Lovejoy, Fabien Lombard, Olivier Jaillon, Daniele Iudicone, Shruti Malviya, Tara Oceans Coordinators, Matthew B. Sullivan, Samuel Chaffron, Eric Karsenti, Marcel Babin, Emmanuel Boss, Patrick Wincker, Lucie Zinger, Colomban de Vargas, Chris Bowler, Lee Karp-Boss. Pan-Arctic plankton community structure and its global connectivity. Elementa: Science of the Anthropocene (2023) 11 (1): 00060. https://doi.org/10.1525/elementa.2022.00060
- Qikun Xing, Lea Cabioch, Antoine Desrut, Gildas Le Corguille, Sylvie Rousvoal, Laurence Dartevelle ,Elodie Rolland, Yann Guitton, Philippe Potin, Gabriel V. Markov, Sylvain Faugeron and Catherine Leblanc. Aldehyde perception induces specific molecular responses in Laminaria digitata and affects algal consumption by a specialist grazer. The Plant Journal (2023) doi: 10.1111/tpj.16450
- Pascoal, F., Tomasino, M.P., Piredda, R. , Henry N. et al. Inter-comparison of marine microbiome sampling protocols. ISME COMMUN. 3, 84 (2023). https://doi.org/10.1038/s43705-023-00278-w
- Rigonato, J., Budinich, M., Murillo, A.A., Henry N. et al. Ocean-wide comparisons of mesopelagic planktonic community structures. ISME COMMUN. 3, 83 (2023). https://doi.org/10.1038/s43705-023-00279-9
- Galand, P.E., Ruscheweyh, HJ., Salazar, G., Henry N. et al. Diversity of the Pacific Ocean coral reef microbiome. Nat Commun 14, 3039 (2023). https://doi.org/10.1038/s41467-023-38500-x
- Delgado, S., Fernandez-Trujillo, M., Houée, G. J Silvent, X Liu, E Corre & JY Sire . Expression of 20 SCPP genes during tooth and bone mineralization in Senegal bichir. Dev Genes Evol (2023). https://doi.org/10.1007/s00427-023-00706-w
- Anaïs Rey, Frédérique Viard, Anne Lizé, Erwan Corre , Alice Valentini, Pierre Thiriet .Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census. Ocean & Coastal Management Volume 241, 1 July 2023, 106625 https://doi.org/10.1016/j.ocecoaman.2023.106625
- Rapport d’activités du pôle ODATIS 2022. https://archimer.ifremer.fr/doc/00839/95127/102815.pdf
- Federico M. Ibarbalz , Nicolas Henry et al.- Global Trends in Marine Plankton Diversity across Kingdoms of Life. Cell Volume 179, Issue 5, 14 November 2019, Pages 1084-1097.e21. https://doi.org/10.1016/j.cell.2019.10.008
- Hugo Doré, Jade Leconte, Ulysse Guyet, Solène Breton, Gregory K. Farrant, David Demory, Morgane Ratin, Mark Hoebeke, Erwan Corre, Frances D. Pitt, Martin Ostrowski, David J. Scanlan, Frédéric Partensky, Christophe Six, Laurence Garczarek. Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. Vol. 7, No. 6. https://doi.org/10.1128/msystems.00656-22
- Hetty KleinJan, Clémence Frioux, Gianmaria Califano, Méziane Aite, Enora Fremy, Elham Karimi, Erwan Corre, Thomas Wichard, Anne Siegel, Catherine Boyen, Simon M. Dittami. Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation. Molecular Ecology . Volume32, Issue3 February 2023. https://doi.org/10.1111/mec.16766
- M Stam, P Lelièvre, M Hoebeke, E Corre, T Barbeyron… - Nucleic Acids Research, 2022 . SulfAtlas, the sulfatase database: state of the art and new developments. Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023, Pages D647–D653, https://doi.org/10.1093/nar/gkac977
- Mariana Câmara dos Reis, Sarah Romac, Florence Le Gall, Dominique Marie, Miguel J. Frada, Gil Koplovitz, Thierry Cariou, Nicolas Henry, Colomban de Vargas, Christian Jeanthon. Exploring the phycosphere of Emiliania huxleyi: From bloom dynamics to microbiome assembly experiments. Molecular Ecology https://doi.org/10.1111/mec.16829
Citations
- Q Zeng, A Lebreton, L Auer, X Man, L Jia, G WangStable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests - Microbiome, 2023 https://doi.org/10.1186/s40168-023-01650-7
- R Stetsenko. The evolution of recombination in self-fertilising species: theoretical approach and genomic study of linkage disequilibrium between deleterious mutations in several …- 2023 HALId:tel-04220046 https://theses.hal.science/tel-04220046
- Claire Golléty, Jon Yearsley, Aline Migné, Dominique Davoult. Functioning of a canopy-dominated intertidal community during emersion: highly productive but heterotrophic at the annual scale. https://doi.org/10.21203/rs.3.rs-3096636/v1
- Belcour A, Got J, Aite M, Delage L, Collén J, Frioux C, Leblanc C, Dittami SM, Blanquart S, Markov GV, Siegel A. Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe. Genome Res. 2023 Jul 19. doi: 10.1101/gr.277056.122. Epub ahead of print. PMID: 37468308.
- Tristan Barbeyron, Nolwen Le Duff, Eric Duchaud, François Thomas. Zobellia alginiliquefaciens sp. nov., a novel member of the flavobacteria isolated from the epibiota of the brown alga Ericaria zosteroides (C. Agardh) Molinari & Guiry 2020 .IJSME. 02 June 2023 https://doi.org/10.1099/ijsem.0.005924
- Franck Dorkeld, Réjane Streiff , Laure Sauné , Guillaume Castel , Mylène Ogliastro , Carole Kerdelhué. Sequence, assembly and count datasets of viruses associated to the pine processionary moth Thaumetopoea pityocampa (Denis & Schiffermüller) (Lepidoptera, Notodontidae) identified from transcriptomic high-throughput sequencing. Data in Brief Volume 48, June 2023, 109180. https://doi.org/10.1016/j.dib.2023.109180
- Portanier et al. Coupling large-spatial scale larval dispersal modelling with barcoding to refine the amphi-Atlantic connectivity hypothesis in deep-sea seep mussels. Front. Mar. Sci., 12 April 2023 | https://doi.org/10.3389/fmars.2023.1122124
- Karine Cahier, Damien Piel, Rubén Barcia-Cruz, David Goudenège, K. Mathias Wegner, Marc Monot, Jesús L. Romalde, Frédérique Le Roux. Environmental vibrio phage–bacteria interaction networks reflect the genetic structure of host populationsFirst published: 06 March 2023 https://doi.org/10.1111/1462-2920.16366
- Ansgar Gruber, Cedar McKay, Miroslav Oborník, Gabrielle Rocap. Multi class intracellular protein targeting predictions in diatoms and other algae with complex plastids: ASAFind 2.0. https://arxiv.org/pdf/2303.02488.pdf
- Théophile Grébert, Laurence Garczarek, Vincent Daubin, Florian Humily, Dominique Marie, Morgane Ratin, Alban Devailly, Gregory K Farrant, Isabelle Mary, Daniella Mella-Flores, Gwenn Tanguy, Karine Labadie, Patrick Wincker, David M Kehoe, Frédéric Partensky, Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria, Genome Biology and Evolution, Volume 14, Issue 4, April 2022, evac035, https://doi.org/10.1093/gbe/evac035
- Jolien J.E. van Hooff, Laura Eme . Lateral gene transfer leaves lasting traces in Rhizaria. 2023 https://www.biorxiv.org/. https://doi.org/10.1101/2023.01.27.525846
- Maria Luiza Pedrotti ,Ana Luzia de Figueiredo Lacerda ,Stephanie Petit,Jean François Ghiglione,Gabriel Gorsky. Vibrio spp and other potential pathogenic bacteria associated to microfibers in the North-Western Mediterranean Sea. 2022 https://doi.org/10.1371/journal.pone.0275284
- Metz, S., Itoïz, S., Obiol, A. et al. Global perspective of environmental distribution and diversity of Perkinsea (Alveolata) explored by a meta-analysis of eDNA surveys. Sci Rep 13, 20111 (2023). https://doi.org/10.1038/s41598-023-47378-0
- Hoste, A., Capblancq, T., Broquet, T. et al. Projection of current and future distribution of adaptive genetic units in an alpine ungulate. Heredity (2023). https://doi-org.inee.bib.cnrs.fr/10.1038/s41437-023-00661-2